Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02638.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5598
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:5481 original size:2 final size:2

Alignment explanation


    Indices: 5474--5504  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       5464 ATTAGCCAAG

                                  *                       
       5474 AT AT AT AT AT AT AT AG AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       5505 ATAGCTTATT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45


Consensus pattern (2 bp):   
AT

Done.