Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02652.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1766
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35


Found at i:1218 original size:34 final size:34

Alignment explanation


    Indices: 1175--1244  Score: 140
    Period size: 34  Copynumber: 2.1  Consensus size: 34

       1165 AATGTGAAAA

                                              
       1175 GTATTTTTTAACTGTTACATTGTGCAGGGAATCT
          1 GTATTTTTTAACTGTTACATTGTGCAGGGAATCT

                                              
       1209 GTATTTTTTAACTGTTACATTGTGCAGGGAATCT
          1 GTATTTTTTAACTGTTACATTGTGCAGGGAATCT

              
       1243 GT
          1 GT

       1245 GCTCATGTCG


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   36  1.00

ACGTcount: A:0.23, C:0.11, G:0.21, T:0.44


Consensus pattern (34 bp):   
GTATTTTTTAACTGTTACATTGTGCAGGGAATCT
Done.