Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00689.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1906
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:903 original size:40 final size:40

Alignment explanation


    Indices: 848--928  Score: 153
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        838 TTGTTGATAG

                                                    
        848 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
          1 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT

                                         *          
        888 TTTGTATAGTTCTTTTTGAAGTGTAAGCATCTTAGAAACT
          1 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT

             
        928 T
          1 T

        929 ATGTCCAGCT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  40   40  1.00

ACGTcount: A:0.28, C:0.10, G:0.17, T:0.44


Consensus pattern (40 bp):   
TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
Done.