Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02671.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6705
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28


Found at i:6052 original size:1 final size:1

Alignment explanation


    Indices: 6046--6072  Score: 54
    Period size: 1  Copynumber: 27.0  Consensus size: 1

       6036 ATCTCTTGCC

                                       
       6046 AAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAA

       6073 GCTCGGAGAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   26  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:6299 original size:66 final size:66

Alignment explanation


    Indices: 6216--6351  Score: 263
    Period size: 66  Copynumber: 2.1  Consensus size: 66

       6206 AATTTGAAAA

                        *                                                    
       6216 ACATGATCTTTCTATGTTTAAATATTCGGGGTCAGCGGCTAACTTCATATTAATGAGGTTTTTTA
          1 ACATGATCTTTCGATGTTTAAATATTCGGGGTCAGCGGCTAACTTCATATTAATGAGGTTTTTTA

             
       6281 C
         66 C

                                                                             
       6282 ACATGATCTTTCGATGTTTAAATATTCGGGGTCAGCGGCTAACTTCATATTAATGAGGTTTTTTA
          1 ACATGATCTTTCGATGTTTAAATATTCGGGGTCAGCGGCTAACTTCATATTAATGAGGTTTTTTA

             
       6347 C
         66 C

                
       6348 ACAT
          1 ACAT

       6352 CTCTTTGTTG


Statistics
Matches: 69,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  66   69  1.00

ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40


Consensus pattern (66 bp):   
ACATGATCTTTCGATGTTTAAATATTCGGGGTCAGCGGCTAACTTCATATTAATGAGGTTTTTTA
C
Done.