Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02672.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2011
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29


Found at i:42 original size:23 final size:21

Alignment explanation


    Indices: 1--51  Score: 79
    Period size: 21  Copynumber: 2.5  Consensus size: 21

                                 
          1 AGAGAGAGAAAGGGGGAGAGT
          1 AGAGAGAGAAAGGGGGAGAGT

                           *     
         22 AGAGAGAGAAAGGGGTAGAG-
          1 AGAGAGAGAAAGGGGGAGAGT

                       
         42 AGAGA-AGAAA
          1 AGAGAGAGAAA

         52 ACAAAAAAAG


Statistics
Matches: 29,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  19    5  0.17
  20    5  0.17
  21   19  0.66

ACGTcount: A:0.49, C:0.00, G:0.47, T:0.04


Consensus pattern (21 bp):   
AGAGAGAGAAAGGGGGAGAGT
Done.