Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02673.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2080
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28


Found at i:1997 original size:4 final size:4

Alignment explanation


    Indices: 1988--2026  Score: 60
    Period size: 4  Copynumber: 9.8  Consensus size: 4

       1978 TGATGGTAGC

                                      *   *                 
       1988 TATG TATG TATG TATG TATG TTTG CATG TATG TATG TAT
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT

       2027 TACATTGTTT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   4   31  1.00

ACGTcount: A:0.23, C:0.03, G:0.23, T:0.51


Consensus pattern (4 bp):   
TATG

Done.