Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02694.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1542
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33


Found at i:1321 original size:51 final size:51

Alignment explanation


    Indices: 1266--1394  Score: 168
    Period size: 51  Copynumber: 2.5  Consensus size: 51

       1256 ATGATCTTGA

                                               *    *         *
       1266 AAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTAATCTTAT
          1 AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAG

                   *         **   * *                          
       1317 AAGATATTATTTTATAAGATTACATATCTTAGATAAGATAGGTAATCTTAG
          1 AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAG

              *             *          
       1368 AATATATGATTTTATATTCTTAGAGAT
          1 AAGATATGATTTTATAATCTTAGAGAT

       1395 TTGATTGTAG


Statistics
Matches: 63,  Mismatches: 15, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  51   63  1.00

ACGTcount: A:0.39, C:0.05, G:0.13, T:0.43


Consensus pattern (51 bp):   
AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAG
Done.