Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02695.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4538
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26


Found at i:4325 original size:51 final size:51

Alignment explanation


    Indices: 4266--4390  Score: 169
    Period size: 51  Copynumber: 2.5  Consensus size: 51

       4256 TCTTGAAAGG

                                           *    *         *    
       4266 TATGATTTTATAATCTTAGAGATCTTAGATATGATATGTAATCTTATAAGA
          1 TATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAGAAGA

               *         **   * *                              
       4317 TATTATTTTATAAGATTACATATCTTAGATAAGATAGGTAATCTTAGAAGA
          1 TATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAGAAGA

                        *          
       4368 TATGATTTTATATTCTTAGAGAT
          1 TATGATTTTATAATCTTAGAGAT

       4391 TTGATTGTAG


Statistics
Matches: 60,  Mismatches: 14, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  51   60  1.00

ACGTcount: A:0.38, C:0.06, G:0.14, T:0.43


Consensus pattern (51 bp):   
TATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAGAAGA

Done.