Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02703.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4151
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:3324 original size:34 final size:34

Alignment explanation


    Indices: 3281--3348  Score: 118
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3271 AGTGGACTTA

                      *                       
       3281 GCTTTTTATGTCCTTAAACAGATTAATTCTATTT
          1 GCTTTTTATGCCCTTAAACAGATTAATTCTATTT

                              *               
       3315 GCTTTTTATGCCCTTAAATAGATTAATTCTATTT
          1 GCTTTTTATGCCCTTAAACAGATTAATTCTATTT

       3349 ACTTATATTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  34   32  1.00

ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50


Consensus pattern (34 bp):   
GCTTTTTATGCCCTTAAACAGATTAATTCTATTT
Done.