Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02720.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 946

Length: 1577
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28


Found at i:1429 original size:26 final size:28

Alignment explanation


    Indices: 1381--1434  Score: 76
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1371 GTTCTCCTCT

                  *        *            
       1381 GTTTTCTTCTTTTCACCCACTCCTTTTG
          1 GTTTTCCTCTTTTCAACCACTCCTTTTG

                                        
       1409 GTTTTCCTCTTTT-AACC-CTCCTTTTG
          1 GTTTTCCTCTTTTCAACCACTCCTTTTG

       1435 TAAGTTGTAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  26    9  0.38
  27    3  0.12
  28   12  0.50

ACGTcount: A:0.07, C:0.31, G:0.07, T:0.54


Consensus pattern (28 bp):   
GTTTTCCTCTTTTCAACCACTCCTTTTG
Done.