Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02731.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3686
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27


Found at i:1970 original size:12 final size:12

Alignment explanation


    Indices: 1953--1978  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1943 CTTAGATTCT

                        
       1953 CACCGTAAGGTC
          1 CACCGTAAGGTC

                        
       1965 CACCGTAAGGTC
          1 CACCGTAAGGTC

              
       1977 CA
          1 CA

       1979 TAGAAACCCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15


Consensus pattern (12 bp):   
CACCGTAAGGTC
Done.