Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02737.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4164
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33


Found at i:2433 original size:161 final size:162

Alignment explanation


    Indices: 2033--2518  Score: 911
    Period size: 162  Copynumber: 3.0  Consensus size: 162

       2023 GTTTTAAAAG

                                                                             
       2033 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
          1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT

                                                                             
       2098 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
         66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG

                                            
       2163 AAGGCGGATTCACTGTAACATAGATCATCACT
        131 AAGGCGGATTCACTGTAACATAGATCATCACT

              *                 *                                            
       2195 TACGCAAATTTAATTGGTGGGAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
          1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT

                                                                             
       2260 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
         66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG

            *                               
       2325 CAGG-GGATTCACTGTAACATAGATCATCACT
        131 AAGGCGGATTCACTGTAACATAGATCATCACT

               *                                                    *        
       2356 TAATCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAACCTGTGTCT
          1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT

                                                                             
       2421 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
         66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG

                *                           
       2486 AAGGTGGATTCACTGTAACATAGATCATCACT
        131 AAGGCGGATTCACTGTAACATAGATCATCACT

             
       2518 T
          1 T

       2519 TACACTCGTC


Statistics
Matches: 315,  Mismatches: 8, Indels: 2
        0.97            0.02        0.01

Matches are distributed among these distances:
 161  156  0.50
 162  159  0.50

ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34


Consensus pattern (162 bp):   
TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
AAGGCGGATTCACTGTAACATAGATCATCACT
Done.