Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02737.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3417
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:1686 original size:161 final size:162

Alignment explanation


    Indices: 1286--1771  Score: 911
    Period size: 162  Copynumber: 3.0  Consensus size: 162

       1276 GTTTTAAAAG

                                                                             
       1286 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
          1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT

                                                                             
       1351 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
         66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG

                                            
       1416 AAGGCGGATTCACTGTAACATAGATCATCACT
        131 AAGGCGGATTCACTGTAACATAGATCATCACT

              *                 *                                            
       1448 TACGCAAATTTAATTGGTGGGAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
          1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT

                                                                             
       1513 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
         66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG

            *                               
       1578 CAGG-GGATTCACTGTAACATAGATCATCACT
        131 AAGGCGGATTCACTGTAACATAGATCATCACT

               *                                                    *        
       1609 TAATCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAACCTGTGTCT
          1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT

                                                                             
       1674 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
         66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG

                *                           
       1739 AAGGTGGATTCACTGTAACATAGATCATCACT
        131 AAGGCGGATTCACTGTAACATAGATCATCACT

             
       1771 T
          1 T

       1772 TACACTCGTC


Statistics
Matches: 315,  Mismatches: 8, Indels: 2
        0.97            0.02        0.01

Matches are distributed among these distances:
 161  156  0.50
 162  159  0.50

ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34


Consensus pattern (162 bp):   
TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
AAGGCGGATTCACTGTAACATAGATCATCACT
Done.