Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02742.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3431
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33


Found at i:381 original size:3 final size:3

Alignment explanation


    Indices: 373--403  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        363 GAGAATAACC

                                                     
        373 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C

        404 TCTTCACGAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32


Consensus pattern (3 bp):   
CAT

Done.