Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02746.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3021
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34


Found at i:1686 original size:44 final size:44

Alignment explanation


    Indices: 1623--1710  Score: 167
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1613 AGGAATTAAG

                                                *       
       1623 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATATTGAAGTT
          1 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT

                                                        
       1667 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT
          1 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT

       1711 TTTTTTTGTT


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   43  1.00

ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33


Consensus pattern (44 bp):   
ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT
Done.