Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02750.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3920
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33


Found at i:2474 original size:14 final size:14

Alignment explanation


    Indices: 2452--2482  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       2442 AGAGTTGGAG

                *         
       2452 TTGGGGATCTTTGT
          1 TTGGAGATCTTTGT

                          
       2466 TTGGAGATCTTTGT
          1 TTGGAGATCTTTGT

               
       2480 TTG
          1 TTG

       2483 ATGTTAGGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.10, C:0.06, G:0.32, T:0.52


Consensus pattern (14 bp):   
TTGGAGATCTTTGT
Done.