Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02760.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5353
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32


Found at i:545 original size:18 final size:19

Alignment explanation


    Indices: 517--554  Score: 69
    Period size: 18  Copynumber: 2.1  Consensus size: 19

        507 TTTTGTTATT

                               
        517 TCTGTTTACTTCTGTTCTG
          1 TCTGTTTACTTCTGTTCTG

                               
        536 TCTG-TTACTTCTGTTCTG
          1 TCTGTTTACTTCTGTTCTG

             
        554 T
          1 T

        555 TTTCATTTTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18   15  0.79
  19    4  0.21

ACGTcount: A:0.05, C:0.21, G:0.16, T:0.58


Consensus pattern (19 bp):   
TCTGTTTACTTCTGTTCTG
Done.