Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00005.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4249
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32


Found at i:710 original size:35 final size:35

Alignment explanation


    Indices: 664--735  Score: 144
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        654 GAAGTTCACT

                                               
        664 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG
          1 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG

                                               
        699 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG
          1 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG

              
        734 TT
          1 TT

        736 GTGAAAACGC


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   37  1.00

ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44


Consensus pattern (35 bp):   
TTATAACCTCTCTGAATTCTACATGAATGTTTTGG
Done.