Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00006.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3523
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30


Found at i:1067 original size:35 final size:35

Alignment explanation


    Indices: 1021--1092  Score: 144
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       1011 GAAGTTCACT

                                               
       1021 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG
          1 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG

                                               
       1056 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG
          1 TTATAACCTCTCTGAATTCTACATGAATGTTTTGG

              
       1091 TT
          1 TT

       1093 GTGAAAACGC


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   37  1.00

ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44


Consensus pattern (35 bp):   
TTATAACCTCTCTGAATTCTACATGAATGTTTTGG
Done.