Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00008.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 548

Length: 914
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37


Found at i:618 original size:26 final size:26

Alignment explanation


    Indices: 588--639  Score: 79
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        578 TTTTATTTTA

                                       
        588 TTTTTATATTT-TGTAACATATATTTG
          1 TTTTTATATTTCTG-AACATATATTTG

                            *         
        614 TTTTTATATTTCTGAATATATATTTG
          1 TTTTTATATTTCTGAACATATATTTG

        640 AAATTTTTAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  26   22  0.92
  27    2  0.08

ACGTcount: A:0.27, C:0.04, G:0.08, T:0.62


Consensus pattern (26 bp):   
TTTTTATATTTCTGAACATATATTTG

Found at i:684 original size:24 final size:24

Alignment explanation


    Indices: 630--686  Score: 62
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        620 TATTTCTGAA

                             *     * 
        630 TATATATTTGAAATTTTTATATATT
          1 TATA-ATTTGAAATTTTGATATAAT

             *                       
        655 TTTAATTTGAAAGTTTTGA-ATAAT
          1 TATAATTTGAAA-TTTTGATATAAT

                    
        679 TATAATTT
          1 TATAATTT

        687 ATTTTGAATT


Statistics
Matches: 27,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  24   19  0.70
  25    8  0.30

ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56


Consensus pattern (24 bp):   
TATAATTTGAAATTTTGATATAAT
Done.