Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00038.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3494
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:2420 original size:130 final size:130

Alignment explanation


    Indices: 2187--2441  Score: 456
    Period size: 130  Copynumber: 2.0  Consensus size: 130

       2177 TTTCAGATGT

                                                           *             *   
       2187 AATATCACTGATACGCATTTCATGTGTAGGTGATAACTAGTTTCGATGAACATAAATGTTAGCAA
          1 AATATCACTGATACGCATTTCATGTGTAGGTGATAACTAGTTTCGATAAACATAAATGTTAACAA

                                                                             
       2252 TTTCAAAGGACACTAACAATAATCTGAACTTAGATTTGCTTGGTTGTCTCCCCTTTACAACTAAC
         66 TTTCAAAGGACACTAACAATAATCTGAACTTAGATTTGCTTGGTTGTCTCCCCTTTACAACTAAC

                                *      *                       *             
       2317 AATATCACTGATACGCATTTTATGTGTCGGTGATAACTAGTTTCGATAAACGTAAATGTTAACAA
          1 AATATCACTGATACGCATTTCATGTGTAGGTGATAACTAGTTTCGATAAACATAAATGTTAACAA

                      *                                                 
       2382 TTTCAAAGGATACTAACAATAATCTGAACTTAGATTTGCTTGGTTGTCTCCCCTTTACAA
         66 TTTCAAAGGACACTAACAATAATCTGAACTTAGATTTGCTTGGTTGTCTCCCCTTTACAA

       2442 TCTAGAGATG


Statistics
Matches: 119,  Mismatches: 6, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 130  119  1.00

ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Consensus pattern (130 bp):   
AATATCACTGATACGCATTTCATGTGTAGGTGATAACTAGTTTCGATAAACATAAATGTTAACAA
TTTCAAAGGACACTAACAATAATCTGAACTTAGATTTGCTTGGTTGTCTCCCCTTTACAACTAAC
Done.