Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00039.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1367
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27


Found at i:106 original size:3 final size:3

Alignment explanation


    Indices: 84--133  Score: 73
    Period size: 3  Copynumber: 16.7  Consensus size: 3

         74 AGCCTCACTT

                    *           *                    *                     
         84 TCA TCA CCA TCA TCA CCA TCA TCA TCA TCA TTA TCA TCA TCA TCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA

              
        132 TC
          1 TC

        134 TGAGTCTCCT


Statistics
Matches: 41,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32


Consensus pattern (3 bp):   
TCA
Done.