Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00700.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3369
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:3342 original size:21 final size:20

Alignment explanation


    Indices: 3325--3365  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 20

       3315 CTAAAAAAGC

                      *          
       3325 GAAAAGAAAATGAGAAAAGAA
          1 GAAAAGAAAAAGA-AAAAGAA

                                
       3346 GAAAAGAAAAAGAAAAAGAA
          1 GAAAAGAAAAAGAAAAAGAA

       3366 AGTG


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    7  0.37
  21   12  0.63

ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02


Consensus pattern (20 bp):   
GAAAAGAAAAAGAAAAAGAA
Done.