Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00048.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 391

Length: 652
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32


Found at i:568 original size:16 final size:17

Alignment explanation


    Indices: 544--576  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

        534 CTAGGTCTTC

                             
        544 TTTTGTGGTTTT-TTTT
          1 TTTTGTGGTTTTGTTTT

                *            
        560 TTTTTTGGTTTTGTTTT
          1 TTTTGTGGTTTTGTTTT

        577 GTTTCTCTCT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82


Consensus pattern (17 bp):   
TTTTGTGGTTTTGTTTT

Found at i:587 original size:2 final size:2

Alignment explanation


    Indices: 580--606  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

        570 TTGTTTTGTT

                                                    
        580 TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC T

        607 GAATGTTTGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.