Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00056.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2393
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26


Found at i:1772 original size:18 final size:18

Alignment explanation


    Indices: 1749--1785  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1739 ACCATTTCAT

                              
       1749 AAACCAAATAACCGGAAC
          1 AAACCAAATAACCGGAAC

                              
       1767 AAACCAAATAACCGGAAC
          1 AAACCAAATAACCGGAAC

             
       1785 A
          1 A

       1786 GTCAAGCCGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.57, C:0.27, G:0.11, T:0.05


Consensus pattern (18 bp):   
AAACCAAATAACCGGAAC

Found at i:1879 original size:18 final size:18

Alignment explanation


    Indices: 1856--1915  Score: 77
    Period size: 18  Copynumber: 3.3  Consensus size: 18

       1846 ACCGAGGATC

                              
       1856 TCCAAGGTTTCGGAGAAA
          1 TCCAAGGTTTCGGAGAAA

                  * *          
       1874 TCCAAGATCTCTGG-GAAA
          1 TCCAAGGTTTC-GGAGAAA

                *             
       1892 TCCATGGTTTCGGAGAAA
          1 TCCAAGGTTTCGGAGAAA

                  
       1910 TCCAAG
          1 TCCAAG

       1916 TCGAACATCT


Statistics
Matches: 34,  Mismatches: 6, Indels: 4
        0.77            0.14        0.09

Matches are distributed among these distances:
  17    2  0.06
  18   30  0.88
  19    2  0.06

ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23


Consensus pattern (18 bp):   
TCCAAGGTTTCGGAGAAA
Done.