Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00061.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 514

Length: 857
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33


Found at i:376 original size:47 final size:47

Alignment explanation


    Indices: 311--417  Score: 187
    Period size: 47  Copynumber: 2.3  Consensus size: 47

        301 TCTTTTCTCC

                                                           
        311 AAAAATCCCCCTCAAAATACAATCCCTTCTCCCCTCGAAATATCAAA
          1 AAAAATCCCCCTCAAAATACAATCCCTTCTCCCCTCGAAATATCAAA

                                                        * *
        358 AAAAATCCCCCTCAAAATACAATCCCTTCTCCCCTCGAAATATCCAG
          1 AAAAATCCCCCTCAAAATACAATCCCTTCTCCCCTCGAAATATCAAA

                         
        405 AAAAATCCTCCCT
          1 AAAAATCC-CCCT

        418 TTACAACTGA


Statistics
Matches: 57,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  47   53  0.93
  48    4  0.07

ACGTcount: A:0.38, C:0.37, G:0.03, T:0.21


Consensus pattern (47 bp):   
AAAAATCCCCCTCAAAATACAATCCCTTCTCCCCTCGAAATATCAAA

Found at i:390 original size:24 final size:23

Alignment explanation


    Indices: 318--399  Score: 76
    Period size: 23  Copynumber: 3.5  Consensus size: 23

        308 TCCAAAAATC

                                   
        318 CCCCTCAAAATACAATCCCTTCT
          1 CCCCTCAAAATACAATCCCTTCT

                  *          *****   
        341 CCCCTCGAAATATCAAAAAAAATC-
          1 CCCCTCAAAATA-C-AATCCCTTCT

                                   
        365 CCCCTCAAAATACAATCCCTTCT
          1 CCCCTCAAAATACAATCCCTTCT

                  *     
        388 CCCCTCGAAATA
          1 CCCCTCAAAATA

        400 TCCAGAAAAA


Statistics
Matches: 43,  Mismatches: 13, Indels: 6
        0.69            0.21        0.10

Matches are distributed among these distances:
  22    4  0.09
  23   23  0.53
  24   12  0.28
  25    4  0.09

ACGTcount: A:0.37, C:0.39, G:0.02, T:0.22


Consensus pattern (23 bp):   
CCCCTCAAAATACAATCCCTTCT
Done.