Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00108.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2155
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36


Found at i:1616 original size:18 final size:17

Alignment explanation


    Indices: 1590--1623  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

       1580 TTTGCATTCG

                *             
       1590 TGGTTGAGTTGGATTGAA
          1 TGGTGGAGTTGG-TTGAA

                            
       1608 TGGTGGAGTTGGTTGA
          1 TGGTGGAGTTGGTTGA

       1624 TGAATTGTTG


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    4  0.27
  18   11  0.73

ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38


Consensus pattern (17 bp):   
TGGTGGAGTTGGTTGAA
Done.