Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00117.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3275
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32


Found at i:3143 original size:21 final size:21

Alignment explanation


    Indices: 3119--3158  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       3109 GCTTCTTTCT

                                  
       3119 GACTTTTAAGTT-GACATTTAA
          1 GACTTTTAA-TTAGACATTTAA

                               
       3140 GACTTTTAATTAGACATTT
          1 GACTTTTAATTAGACATTT

       3159 GAGATGAATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    2  0.11
  21   16  0.89

ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45


Consensus pattern (21 bp):   
GACTTTTAATTAGACATTTAA
Done.