Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00705.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2290
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:764 original size:136 final size:136

Alignment explanation


    Indices: 615--888  Score: 521
    Period size: 136  Copynumber: 2.0  Consensus size: 136

        605 ACCAAAAGAA

                                                          *                  
        615 GAGTATAAGATAAACAAACAAACAAAACCCAAAAATACAAAGTTCTGTCGAAATTCTCACAAATT
          1 GAGTATAAGATAAACAAACAAACAAAACCCAAAAATACAAAGTTCTCTCGAAATTCTCACAAATT

                                                                             
        680 CTCTCTTAATTATGTTGTTGAATCTATTTCTCTAGGATTGCTAAAAGCCCTATTTATAGGCTAAA
         66 CTCTCTTAATTATGTTGTTGAATCTATTTCTCTAGGATTGCTAAAAGCCCTATTTATAGGCTAAA

                  
        745 ATTTGT
        131 ATTTGT

                            *      *                                         
        751 GAGTATAAGATAAACACACAAACTAAACCCAAAAATACAAAGTTCTCTCGAAATTCTCACAAATT
          1 GAGTATAAGATAAACAAACAAACAAAACCCAAAAATACAAAGTTCTCTCGAAATTCTCACAAATT

                                                                             
        816 CTCTCTTAATTATGTTGTTGAATCTATTTCTCTAGGATTGCTAAAAGCCCTATTTATAGGCTAAA
         66 CTCTCTTAATTATGTTGTTGAATCTATTTCTCTAGGATTGCTAAAAGCCCTATTTATAGGCTAAA

                  
        881 ATTTGT
        131 ATTTGT

              
        887 GA
          1 GA

        889 CTAATCTGAT


Statistics
Matches: 135,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 136  135  1.00

ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32


Consensus pattern (136 bp):   
GAGTATAAGATAAACAAACAAACAAAACCCAAAAATACAAAGTTCTCTCGAAATTCTCACAAATT
CTCTCTTAATTATGTTGTTGAATCTATTTCTCTAGGATTGCTAAAAGCCCTATTTATAGGCTAAA
ATTTGT
Done.