Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00142.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1503
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30


Found at i:411 original size:18 final size:18

Alignment explanation


    Indices: 388--480  Score: 159
    Period size: 18  Copynumber: 5.2  Consensus size: 18

        378 TACGACCGTT

                              
        388 TACGGTACTATTCACGTA
          1 TACGGTACTATTCACGTA

                        *     
        406 TACGGTACTATTTACGTA
          1 TACGGTACTATTCACGTA

                              
        424 TACGGTACTATTCACGTA
          1 TACGGTACTATTCACGTA

                 *            
        442 TACGGCACTATTCACGTA
          1 TACGGTACTATTCACGTA

                     *        
        460 TACGGTACTGTTCACGTA
          1 TACGGTACTATTCACGTA

               
        478 TAC
          1 TAC

        481 AGTAGTTGGG


Statistics
Matches: 70,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  18   70  1.00

ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33


Consensus pattern (18 bp):   
TACGGTACTATTCACGTA

Done.