Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00158.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31


Found at i:1173 original size:30 final size:30

Alignment explanation


    Indices: 1138--1199  Score: 97
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1128 AATACCGGAG

                          *          *    
       1138 ACCAAGTAAAATACTTAAGTAACGTTAAAT
          1 ACCAAGTAAAATACCTAAGTAACGTAAAAT

                                  *       
       1168 ACCAAGTAAAATACCTAAGTAATGTAAAAT
          1 ACCAAGTAAAATACCTAAGTAACGTAAAAT

              
       1198 AC
          1 AC

       1200 TTAAGGAATA


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.52, C:0.15, G:0.10, T:0.24


Consensus pattern (30 bp):   
ACCAAGTAAAATACCTAAGTAACGTAAAAT
Done.