Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00168.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 650

Length: 1084
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:107 original size:5 final size:5

Alignment explanation


    Indices: 97--123  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

         87 AGGGTGTCCA

                                            
         97 AAGAG AAGAG AAGAG AAGAG AAGAG AA
          1 AAGAG AAGAG AAGAG AAGAG AAGAG AA

        124 ATGGTGGGTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00


Consensus pattern (5 bp):   
AAGAG

Done.