Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00185.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 746

Length: 1244
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34


Found at i:1220 original size:37 final size:37

Alignment explanation


    Indices: 1170--1244  Score: 123
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1160 ATCATTTGGT

                                                 
       1170 CTTGGAATCAAATTCCAATCTAATAGGATCAATATTC
          1 CTTGGAATCAAATTCCAATCTAATAGGATCAATATTC

                             * *             *   
       1207 CTTGGAATCAAATTCCAGTTTAATAGGATCAATGTTC
          1 CTTGGAATCAAATTCCAATCTAATAGGATCAATATTC

             
       1244 C
          1 C


Statistics
Matches: 35,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  37   35  1.00

ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33


Consensus pattern (37 bp):   
CTTGGAATCAAATTCCAATCTAATAGGATCAATATTC
Done.