Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00188.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3281
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33


Found at i:2365 original size:27 final size:27

Alignment explanation


    Indices: 2324--2377  Score: 90
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2314 TTACCCTTAA

                     **                
       2324 CAATATACTGTATGTAGAAGATATTAG
          1 CAATATACTCCATGTAGAAGATATTAG

                                       
       2351 CAATATACTCCATGTAGAAGATATTAG
          1 CAATATACTCCATGTAGAAGATATTAG

       2378 GAAGAATCTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31


Consensus pattern (27 bp):   
CAATATACTCCATGTAGAAGATATTAG
Done.