Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00200.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1881
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39


Found at i:921 original size:29 final size:29

Alignment explanation


    Indices: 869--948  Score: 74
    Period size: 29  Copynumber: 2.7  Consensus size: 29

        859 CACAAATTTT

                           *   *            
        869 ATTTGATTGAATTTTATCACTAAAATTTGA-A
          1 ATTT-ATTGAATTTTGT-ATTAAAATTT-ACA

                   *                      
        900 ATTTATTTAATTTTGTATT-AAATTTATCA
          1 ATTTATTGAATTTTGTATTAAAATTTA-CA

            *                   
        929 CTTTATTGAATTTTGTATTA
          1 ATTTATTGAATTTTGTATTA

        949 TAACTTATTA


Statistics
Matches: 41,  Mismatches: 5, Indels: 7
        0.77            0.09        0.13

Matches are distributed among these distances:
  27    1  0.02
  28    6  0.15
  29   20  0.49
  30   10  0.24
  31    4  0.10

ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54


Consensus pattern (29 bp):   
ATTTATTGAATTTTGTATTAAAATTTACA
Done.