Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00213.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 751

Length: 1252
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33


Found at i:234 original size:3 final size:3

Alignment explanation


    Indices: 226--300  Score: 141
    Period size: 3  Copynumber: 25.0  Consensus size: 3

        216 ATGTAAAATT

                                                                           
        226 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

                                        *      
        274 AGA AGA AGA AGA AGA AGA AGA GGA AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA

        301 TATGAAATCA


Statistics
Matches: 70,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   3   70  1.00

ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00


Consensus pattern (3 bp):   
AGA

Done.