Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00230.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 908

Length: 1514
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:1486 original size:17 final size:18

Alignment explanation


    Indices: 1464--1503  Score: 64
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1454 ATGATAAGGG

                              
       1464 TTCATACATA-TTTGACT
          1 TTCATACATATTTTGACT

                  *           
       1481 TTCATATATATTTTGACT
          1 TTCATACATATTTTGACT

                 
       1499 TTCAT
          1 TTCAT

       1504 TTTCCTTTTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  17    9  0.43
  18   12  0.57

ACGTcount: A:0.28, C:0.15, G:0.05, T:0.53


Consensus pattern (18 bp):   
TTCATACATATTTTGACT

Done.