Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00242.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 345

Length: 576
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34


Found at i:470 original size:19 final size:19

Alignment explanation


    Indices: 448--484  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        438 TTTTGGTTTT

                                
        448 GTTTTATTTT-TTTTATTTA
          1 GTTTT-TTTTGTTTTATTTA

                              
        467 GTTTTTTTTGTTTTATTT
          1 GTTTTTTTTGTTTTATTT

        485 TGGTGTAAGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    4  0.24
  19   13  0.76

ACGTcount: A:0.11, C:0.00, G:0.08, T:0.81


Consensus pattern (19 bp):   
GTTTTTTTTGTTTTATTTA
Done.