Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00248.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2586
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29


Found at i:2271 original size:35 final size:35

Alignment explanation


    Indices: 2232--2302  Score: 124
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       2222 CACTTGCCTC

                                         *     
       2232 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
          1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA

                  *                            
       2267 TTCCCATTCTCCCATGCTGTCTGCCACCAACACCA
          1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA

             
       2302 T
          1 T

       2303 CACACACTCC


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  35   34  1.00

ACGTcount: A:0.18, C:0.46, G:0.10, T:0.25


Consensus pattern (35 bp):   
TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
Done.