Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00269.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2892
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1647 original size:36 final size:36

Alignment explanation


    Indices: 1607--1675  Score: 120
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       1597 TGCGTCGATG

                                        *       
       1607 CCCTCCTGGTGGATCTCCCACTTACAGCTCTGGATA
          1 CCCTCCTGGTGGATCTCCCACTTACAGCACTGGATA

                                   *         
       1643 CCCTCCTGGTGGATCTCCCACTTTCAGCACTGG
          1 CCCTCCTGGTGGATCTCCCACTTACAGCACTGG

       1676 GAGCCAGTCT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.14, C:0.38, G:0.20, T:0.28


Consensus pattern (36 bp):   
CCCTCCTGGTGGATCTCCCACTTACAGCACTGGATA
Done.