Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00277.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1251
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:1150 original size:3 final size:3

Alignment explanation


    Indices: 1142--1184  Score: 63
    Period size: 3  Copynumber: 15.0  Consensus size: 3

       1132 TACTGCATTA

                                          *                            
       1142 ATG ATG ATG ATG ATG ATG AT- ATT ATG ATG ATG ATG ATG -TG ATG
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG

       1185 GCTTCAGTGA


Statistics
Matches: 37,  Mismatches: 1, Indels: 4
        0.88            0.02        0.10

Matches are distributed among these distances:
   2    4  0.11
   3   33  0.89

ACGTcount: A:0.33, C:0.00, G:0.30, T:0.37


Consensus pattern (3 bp):   
ATG

Done.