Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00718.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2177
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31


Found at i:890 original size:24 final size:24

Alignment explanation


    Indices: 863--912  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        853 CCCTTAAGAA

                                    
        863 GCCCTTTTGTAGCCTATAAGCTCT
          1 GCCCTTTTGTAGCCTATAAGCTCT

                                    
        887 GCCCTTTTGTAGCCTATAAGCTCT
          1 GCCCTTTTGTAGCCTATAAGCTCT

              
        911 GC
          1 GC

        913 TAGGTAAAAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.16, C:0.30, G:0.18, T:0.36


Consensus pattern (24 bp):   
GCCCTTTTGTAGCCTATAAGCTCT
Done.