Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00718.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2945
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:1005 original size:24 final size:24

Alignment explanation


    Indices: 978--1027  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        968 CCCTTAAGAA

                                    
        978 GCCCTTTTGTAGCCTATAAGCTCT
          1 GCCCTTTTGTAGCCTATAAGCTCT

                                    
       1002 GCCCTTTTGTAGCCTATAAGCTCT
          1 GCCCTTTTGTAGCCTATAAGCTCT

              
       1026 GC
          1 GC

       1028 TAGGTAAAAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.16, C:0.30, G:0.18, T:0.36


Consensus pattern (24 bp):   
GCCCTTTTGTAGCCTATAAGCTCT

Found at i:1190 original size:78 final size:78

Alignment explanation


    Indices: 1061--1216  Score: 276
    Period size: 78  Copynumber: 2.0  Consensus size: 78

       1051 TAACTTGTAA

                                          *                                  
       1061 TTTAAGAAATCTGTTTCTCTAAAATATTTGGCTTTCAAAGTTCACACTAGTAACGAATTAGGATT
          1 TTTAAGAAATCTGTTTCTCTAAAATATTTGCCTTTCAAAGTTCACACTAGTAACGAATTAGGATT

                         
       1126 ACGTAACAAATGC
         66 ACGTAACAAATGC

                      *       *                                              
       1139 TTTAAGAAATTTGTTTCTTTAAAATATTTGCCTTTCAAAGTTCACACTAGTAACGAATTAGGATT
          1 TTTAAGAAATCTGTTTCTCTAAAATATTTGCCTTTCAAAGTTCACACTAGTAACGAATTAGGATT

             *           
       1204 ATGTAACAAATGC
         66 ACGTAACAAATGC

       1217 AACCCTGTTT


Statistics
Matches: 74,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  78   74  1.00

ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37


Consensus pattern (78 bp):   
TTTAAGAAATCTGTTTCTCTAAAATATTTGCCTTTCAAAGTTCACACTAGTAACGAATTAGGATT
ACGTAACAAATGC
Done.