Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00284.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4339
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:1563 original size:91 final size:91

Alignment explanation


    Indices: 1408--1589  Score: 364
    Period size: 91  Copynumber: 2.0  Consensus size: 91

       1398 GGCCTGGTTA

                                                                             
       1408 GACTATGCTGTCAAGAAACATAATTTACCATTGGCATTGACTAGAGCAAGTGGAATCTATCAATA
          1 GACTATGCTGTCAAGAAACATAATTTACCATTGGCATTGACTAGAGCAAGTGGAATCTATCAATA

                                      
       1473 TGTTAATTTGGTCTTATTATTTGTAT
         66 TGTTAATTTGGTCTTATTATTTGTAT

                                                                             
       1499 GACTATGCTGTCAAGAAACATAATTTACCATTGGCATTGACTAGAGCAAGTGGAATCTATCAATA
          1 GACTATGCTGTCAAGAAACATAATTTACCATTGGCATTGACTAGAGCAAGTGGAATCTATCAATA

                                      
       1564 TGTTAATTTGGTCTTATTATTTGTAT
         66 TGTTAATTTGGTCTTATTATTTGTAT

       1590 TTATAATATG


Statistics
Matches: 91,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  91   91  1.00

ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37


Consensus pattern (91 bp):   
GACTATGCTGTCAAGAAACATAATTTACCATTGGCATTGACTAGAGCAAGTGGAATCTATCAATA
TGTTAATTTGGTCTTATTATTTGTAT
Done.