Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00310.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 426

Length: 710
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28


Found at i:311 original size:78 final size:78

Alignment explanation


    Indices: 182--337  Score: 303
    Period size: 78  Copynumber: 2.0  Consensus size: 78

        172 AAAAAAGCGG

                    *                                                        
        182 GAGTAAAAGGGAGTCGTTCAAGTTCAGCACCATCTTGGGTAGGCCATGATTCTCCTCCCAATAAT
          1 GAGTAAAAAGGAGTCGTTCAAGTTCAGCACCATCTTGGGTAGGCCATGATTCTCCTCCCAATAAT

                         
        247 CCTCCCTCGCCGC
         66 CCTCCCTCGCCGC

                                                                             
        260 GAGTAAAAAGGAGTCGTTCAAGTTCAGCACCATCTTGGGTAGGCCATGATTCTCCTCCCAATAAT
          1 GAGTAAAAAGGAGTCGTTCAAGTTCAGCACCATCTTGGGTAGGCCATGATTCTCCTCCCAATAAT

                         
        325 CCTCCCTCGCCGC
         66 CCTCCCTCGCCGC

        338 CTTCGCAGAA


Statistics
Matches: 77,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  78   77  1.00

ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24


Consensus pattern (78 bp):   
GAGTAAAAAGGAGTCGTTCAAGTTCAGCACCATCTTGGGTAGGCCATGATTCTCCTCCCAATAAT
CCTCCCTCGCCGC
Done.