Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00388.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4049
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:4021 original size:13 final size:13

Alignment explanation


    Indices: 4003--4027  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       3993 GGGCGAAATA

                         
       4003 TCTTTAAGTATTT
          1 TCTTTAAGTATTT

                        
       4016 TCTTTAAGTATT
          1 TCTTTAAGTATT

       4028 GTATTTCTAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60


Consensus pattern (13 bp):   
TCTTTAAGTATTT
Done.