Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00319.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3801
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27


Found at i:14 original size:6 final size:6

Alignment explanation


    Indices: 4--33  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

          1 AAC

                                                
          4 AAGAAA AAGAAA AAGAAA AAGAAA AA-AAA A
          1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA A

         34 CACTGTAATT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    4  0.17
   6   20  0.83

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (6 bp):   
AAGAAA

Done.