Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00723.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5009
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:3449 original size:33 final size:33

Alignment explanation


    Indices: 3411--3509  Score: 162
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       3401 GACTGAGTGG

                    *                        
       3411 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

                      *                      
       3444 GAGTGTTTTGCTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

             *                      *        
       3477 GGGTGTTTTGTTGCTGGACAGGAGTTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

       3510 CAAGAAGAAA


Statistics
Matches: 61,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  33   61  1.00

ACGTcount: A:0.17, C:0.09, G:0.41, T:0.32


Consensus pattern (33 bp):   
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Done.