Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00328.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1685
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:126 original size:13 final size:12

Alignment explanation


    Indices: 107--131  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

         97 GAAAAAACCC

                        
        107 ATTTTTTTAGTG
          1 ATTTTTTTAGTG

                        
        119 ATTTTTTTAGTG
          1 ATTTTTTTAGTG

             
        131 A
          1 A

        132 CAATTTAAAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.20, C:0.00, G:0.16, T:0.64


Consensus pattern (12 bp):   
ATTTTTTTAGTG
Done.