Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00333.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 492

Length: 820
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:28 original size:3 final size:3

Alignment explanation


    Indices: 20--61  Score: 57
    Period size: 3  Copynumber: 14.0  Consensus size: 3

         10 CCGTCATGGA

                         *      *            *                     
         20 GAT GAT GAT GGT GAT AAT GAT GAT GTT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

         62 TGGTTCAATG


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36


Consensus pattern (3 bp):   
GAT

Done.